Publications | Aziz Khan - Research Scientist, Stanford Cancer Institute, Stanford University

Changing scientific meetings for the better

A call to eradicate non-inclusive terms from the life sciences

COVID-19: students caught in Pakistan's digital divide

UniBind: maps of high-confidence direct TF-DNA interactions across nine species

BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

JASPAR 2020: update of the open-access database of transcription factor binding profiles

Modeling RNA-Binding Protein Specificity In Vivo by Precisely Registering Protein-RNA Crosslink Sites

Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers

High OGT activity is essential for MYC-driven proliferation of prostate cancer cells

A map of direct TF-DNA interactions in the human genome

Super-enhancers are transcriptionally more active and cell-type-specific than stretch enhancers

Making genome browsers portable and personal

Bioconda: sustainable and comprehensive software distribution for the life sciences

JASPAR RESTful API: accessing JASPAR data from any programming language

Put science first and formatting later

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

Intervene: a tool for intersection and visualization of multiple gene or genomic region sets

dbSUPER: a database of super-enhancers in mouse and human genome

Adaptive Watermark Strength Selection using Particle Swarm Optimization