Publications

Recent publications and preprints

More Publications

Talks and Posters

Talks and poster presentations

  • Preprints in the life sciences, Sven Furberg Seminar in Bioinformatics and Statistical Genomics, Oslo, Norway. Jan 2019. - [Talk]

  • A dynamic landscape of enhancer clusters during mouse development, CSHL meeting on Epigenetics & Chromatin, New York, USA. Sep 2018. - [Poster]

  • Towards a format-free submission policy: Let’s put science first, 2nd annual conference of Digital Life Norway Research School, Stiklestad, Norway. Jun 2018. - [Talk]

  • JASPAR: a comprehensive database of transcription factor binding profiles, 11th International Biocuration Conference, Shanghai. Apr 2018. - [Poster and Talk]

  • Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers, Genomic Regulation 2018, Haute-Nendaz, Switzerland. Mar 2018. - [Poster]

  • A novel web framework and RESTful API for the JASPAR database of transcription factor binding profiles, 3rd annual conference of NORBIS, Tromsø, Norway. Nov 2017. - [Poster]

  • JASPAR RESTful API: accessing JASPAR data from any programming languages, GREEKC Training on Knowledge Commons and Tools interoperability, Lisbon, Portugal. Oct 2017. - [Talk]

  • Intervene: a tool for intersection and visualization of multiple gene or genomic region sets, ISCB Student Council Symposium 2017, Prague, Czech Republic. Jul 2017. - [Talk]

  • Intervene: a tool for intersection and visualization of multiple gene or genomic region sets, ISMB/ECCB 2017, Prague, Czech Republic. Jul 2017. - [Poster]

  • Integrative analysis reveals significant differences between super and stretch enhancers, Gene Expression Data Analysis , Mainz, Germany. Nov 2016. - [Poster and Talk]

  • Comprehensive analysis, prediction, and annotation of super-enhancers, Sven Furberg Seminar in Bioinformatics and Statistical Genomics, Oslo, Norway. Apr 2017. - [Talk]

  • Computational prediction, characterization & annotation of super-enhancers & analysis of their key features, CSHA - Chromatin, Epigenetics & Transcription, Suzhou, China. May 2016. - [Poster]

  • dbSUPER - an extensive and interactive database of super-enhancers, CSHA/AACR Meeting - Big Data, Comp. & Sys. Bio. in Cancer, Suzhou, China. Dec 2015. - [Poster]

  • Super-enhancer prediction from epigenetic signatures and sequence motif data, ISMB/ECCB 2015, Dublin, Ireland. Jul 2015. - [Poster]

  • An extensive and interactive database of super-enhancers – dbSUPER, ISCB Student Council Symposium 2015, Dublin, Ireland, Jul 2015. - [Poster]

  • An extensive and interactive database of super-enhancers – dbSUPER, 8th International Biocuration Conference (IBC), Beijing. Apr 2015. - [Poster]

  • Integration of ChIP-seq and machine learning reveals super-enhancers and features of biological significance, Synthetic Biology Workshops, Tsinghua University. May 2014. - [Talk]

Softwares

Softwares and resources

UniBind

A map of direct TF-DNA interactions in the human genome.

JASPAR 2018

The high-quality transcription factor binding profile database

JASPAR RESTful API

A RESTful API for programmatically accessing JASPAR data from any programming language

Intervene

A tool for intersection and visualization of multiple gene or genomic region sets

Intervene Web App

A Shiny application for intersection and visualization of multiple gene/name sets

dbSUPER

The first integrated and interactive database of super-enhancers.

Recent Posts

More Posts

It took 3 years to get my first and last PhD paper out after 4 rejections.

CONTINUE READING

We urge journals and the scientific community to adopt, to put science first and formatting later

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A detailed list of funding schemes and travel grants for postdocs and early career researchers.

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The 2018 release of JASPAR comes with a completely redesigned web interface that meets modern web standards.

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Activities

Academic and social activities

Academic Activities

  • Ambassador, eLife and ASAPbio (2018-2019)
  • Member, International Society for Computational Biology (ISCB), 2015 – Present
  • Member, International Society for Biocuration (ISB), 2015 – Present
  • Curator, OMICtools, transcription factors and regulatory elements, 2014 – Present
  • Co-Chair, Web Committee, ISCB Student Council, 2016 – Present
  • Reviewer, ISCB Student Council Symposium, 2015, 2016, 2017, 2018
  • Organizer, Young Investigator Meeting (YIM), University of Oslo, Norway, Sep 2018
  • Chair Web Committee,ISCB African Student Symposium 2017, Entebbe, Uganda., Oct 2017
  • Organizer, Young Investigator Meeting (YIM), University of Helsinki, Finland, Sep 2017
  • Reviewer, for scientific journals. Check the eer review profile

Social activities

  • Volunteer, ISMB/ECCB 2017, Prague, Czech Republic, Jul 2017
  • Volunteer, ISMB/ECCB 2015, Dublin, Ireland, Jul 2015
  • Volunteer, ICML 2014, Jun 2014
  • Volunteer, RECOMB 2013, Beijing, Apr 2013
  • Volunteer, Migrant Children’s Foundation (MCF), China, 2013 – present
  • Founder, Gilgit-Baltistan Academia, an academic portal, 2011
  • Participant, 3-Day Startup, Peking University, Beijing, China, 2012
  • Participant, Beijing TechHive, Microsoft Research Asia, Beijing, Mar 2015
  • Volunteer, to develop & maintain Tsinghua ENCODE Journal Club website, 2013

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